noobschool.blogg.se - How to install rosetta stone for a disc image

How to install rosetta stone for a disc image archive#
How to install rosetta stone for a disc image code#
How to install rosetta stone for a disc image license#
How to install rosetta stone for a disc image download#

For example if you use extras=mpi, you use rosetta_ instead of rosetta_ NOTE when you build with different extras, the extension will change. scons.py -j 5 mode=release bin/rosetta_ extras=mpi

How to install rosetta stone for a disc image code#

Running Rosetta in MPI mode requires (potentially non-trivial) edits to the ttings files.įor example the code below compiles only the rosetta_scripts application in MPI format and release mode using 5 cores: >.

"extras=mpi" compiles Rosetta in MPI Massage Passing Interface format (for those executables that support MPI runs).

"extras=opencl": enables GPU usage for those apps that support it.

"extras=graphics": mode enables OpenGL graphics for those apps that support it.

This can be useful for copying and running the apps on other systems.

"extras=static": builds static binaries.

"bin/rosetta_" or "rosetta_scripts": only compiles the mentioned application (multiple can be listed).

"bin": complete compilation of all applications in the bin/ directory.

empty: if you don't provide any location, by default only the libraries will be built.

It is mostly used for development and debugging purposes.

mode=debug (or not mentioning any mode) includes additional checks which slows down Rosetta runs.

mode=release compiles with optimizations to produce a faster version of Rosetta.

There are several other flags and modes that you can use to build certain parts or features. You can now run Rosetta! More Options for BuildingĪs you noticed, the command you ran had a "mode" option and that you mentioned "bin" specifically. There are several new folders in it, including bin. scons.py -j 20 mode=release binĮxpect a long time for the compilation to finish, several hours on one core. For example the command below uses 20 cores to build: >. j is indicating how many cores you want to use. Now you can build Rosetta using this general command line (make sure you are in the source folder) >.

How to install rosetta stone for a disc image download#

While Scons is available as a separate download, the Rosetta download includes a version, which is the recommended version to use in compiling Rosetta. (See Install a complier for more information on installing a compiler.) Rosetta developers typically use GCC or Clang, although other standard-compliant compilers can be used. To compile Rosetta you need a C++ compiler. In order to be able to run Rosetta, you need to first compile the code. If you downloaded the source bundle, you can see that the bin/ directory is currently empty. Open the file that you unzipped and navigate through the folders: Rosetta -> main -> source or use the following bash command: > cd rosetta*/main/source

Dual booting or virtual machines running Linux/MacOS are options. Unfortunately, currently there is no support for the whole Rosetta on Windows. In a linux or mac, you can untar/uncompress the file by either double clicking on it or run this command in your terminal: > tar -xvzf

How to install rosetta stone for a disc image archive#

The downloaded file is in form of tar archive with. (If you're interested in noncanonical amino acids, download the NCAA rotamer libraries as well.) Installing Rosetta The " source" distribution should be useful on all platforms on which Rosetta can run. The binary version may allow you to skip the compilation stage, but are more limited in the platforms on which they work. Numbered releases (since Rosetta3.6) are simply weekly releases that have been specially labeled - all weekly releases pass the same suite of tests that the numbered releases do.įor many version, we offer both a source and a binary version. When you click, you can see the latest numbered release as well as several weekly releases.

How to install rosetta stone for a disc image license#

Make sure you download the version corresponding to the license you have. After you obtained the license, you can download Rosetta. Obtaining a license is free for academic users. Building Rosetta using the Rosetta Xcode project (Mac)įor any academic or commercial use, you need to request a license.